nf-core_modules/tests/software/adapterremoval/test.yml
Maxime Borry aa76c6d870
new module: AdapterRemoval (#309)
* add adapterremoval module

* fix indentations

* switch to process_medium

* update docker tests

* remove duplicated entry

* fix line ending

* Update software/adapterremoval/main.nf

* Update software/adapterremoval/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-22 17:16:04 +00:00

34 lines
1.4 KiB
YAML

- name: adapterremoval test_adapterremoval_single_end
command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_single_end -c tests/config/nextflow.config
tags:
- adapterremoval_single_end
- adapterremoval
files:
- path: output/adapterremoval/test.log
md5sum: 2fd3d5d703b63ba33a83021fccf25f77
- path: output/adapterremoval/test.trimmed.fastq.gz
md5sum: 62139afee94defad5b83bdd0b8475a1f
- name: adapterremoval test_adapterremoval_paired_end
command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end -c tests/config/nextflow.config
tags:
- adapterremoval_paired_end
- adapterremoval
files:
- path: output/adapterremoval/test.pair2.trimmed.fastq.gz
md5sum: f076a9f666235e01a3281f8c46c9d010
- path: output/adapterremoval/test.log
md5sum: bea86105aff4d27fe29c83e24498fefa
- path: output/adapterremoval/test.pair1.trimmed.fastq.gz
md5sum: f076a9f666235e01a3281f8c46c9d010
- name: adapterremoval test_adapterremoval_paired_end_collapse
command: nextflow run tests/software/adapterremoval -entry test_adapterremoval_paired_end_collapse -c tests/config/nextflow.config
tags:
- adapterremoval_paired_end_collapse
- adapterremoval
files:
- path: output/adapterremoval/test.log
md5sum: 97cb97b3d03123ac88430768b2e36c59
- path: output/adapterremoval/test.merged.fastq.gz
md5sum: 50a4f9fdac6a24e211eb4dcf9f292bef