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https://github.com/MillironX/nf-core_modules.git
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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
13 lines
533 B
Text
13 lines
533 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BLAST_MAKEBLASTDB } from '../../../../software/blast/makeblastdb/main.nf' addParams( options: ['args': '-dbtype nucl'] )
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include { BLAST_BLASTN } from '../../../../software/blast/blastn/main.nf' addParams( options: [:] )
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workflow test_blast_blastn {
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input = [ file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true) ]
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BLAST_MAKEBLASTDB ( input )
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BLAST_BLASTN ( [ [id:'test'], input ], BLAST_MAKEBLASTDB.out.db )
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}
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