nf-core_modules/tests/software/bwamem2/mem/test.yml
FriederikeHanssen 555f1710e0
Update test paths in bwa mappers (#387)
* Update test paths in bwa mappers

* Fix indentation

* indices pass lcoally now

* no idea how they could ever pass before, Tests pass locally no

* Update samtools and bwamem2 versions

* Correct mulled containers + md5
2021-03-25 09:24:21 +00:00

39 lines
1.6 KiB
YAML

- name: bwamem2 mem single-end
command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_single_end -c tests/config/nextflow.config
tags:
- bwamem2
- bwamem2_mem
- bwamem2_mem_single_end
files:
- path: ./output/bwamem2/test.bam
md5sum: 2133c011119ea11f06f0a9b1621ba05b
- path: ./output/index/bwamem2/genome.fasta.amb
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
- path: ./output/index/bwamem2/genome.fasta.pac
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
- path: ./output/index/bwamem2/genome.fasta.0123
md5sum: b02870de80106104abcb03cd9463e7d8
- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
md5sum: d097a1b82dee375d41a1ea69895a9216
- path: ./output/index/bwamem2/genome.fasta.ann
md5sum: c32e11f6c859f166c7525a9c1d583567
- name: bwamem2 mem paired-end
command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
tags:
- bwamem2
- bwamem2_mem
- bwamem2_mem_paired_end
files:
- path: ./output/bwamem2/test.bam
md5sum: d8fadab5cef04faff1851a8162fc30b5
- path: ./output/index/bwamem2/genome.fasta.amb
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
- path: ./output/index/bwamem2/genome.fasta.pac
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
- path: ./output/index/bwamem2/genome.fasta.0123
md5sum: b02870de80106104abcb03cd9463e7d8
- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
md5sum: d097a1b82dee375d41a1ea69895a9216
- path: ./output/index/bwamem2/genome.fasta.ann
md5sum: c32e11f6c859f166c7525a9c1d583567