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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
15 lines
No EOL
493 B
Text
15 lines
No EOL
493 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { QUALIMAP_BAMQC } from '../../../../software/qualimap/bamqc/main.nf' addParams( options: [:] )
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workflow test_qualimap_bamqc {
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true)
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]
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gff = file("dummy_file.txt")
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use_gff = false
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QUALIMAP_BAMQC ( input, gff, use_gff )
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} |