nf-core_modules/tests/software/salmon/index/test.yml
Jose Espinosa-Carrasco ee90e7af77
Add default output dir for modules that create indices, updated (#336)
* Add default output dir for modules that create indices

* Change path for index module test output

* Fix bowtie2/align tests

* Fixing bowtie/align tests

* Fix genomegenerate test

* Fixing README linting
2021-03-23 17:55:01 +00:00

31 lines
1.3 KiB
YAML

- name: salmon index
command: nextflow run ./tests/software/salmon/index -entry test_salmon_index -c tests/config/nextflow.config
tags:
- salmon
- salmon_index
files:
- path: ./output/index/salmon/ref_indexing.log
- path: ./output/index/salmon/refseq.bin
md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
- path: ./output/index/salmon/versionInfo.json
md5sum: 204865f645102587c4953fccb256797c
- path: ./output/index/salmon/complete_ref_lens.bin
md5sum: f57562f1fca3ae7b133f895ae13c3d08
- path: ./output/index/salmon/mphf.bin
md5sum: 53669a47610e33e031faafd32703b714
- path: ./output/index/salmon/pre_indexing.log
- path: ./output/index/salmon/ctable.bin
- path: ./output/index/salmon/duplicate_clusters.tsv
md5sum: 51b5292e3a874119c0e1aa566e95d70c
- path: ./output/index/salmon/reflengths.bin
md5sum: f57562f1fca3ae7b133f895ae13c3d08
- path: ./output/index/salmon/info.json
md5sum: 61ff4d3471134c280668355ddd39e99f
- path: ./output/index/salmon/refAccumLengths.bin
md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
- path: ./output/index/salmon/ctg_offsets.bin
md5sum: 27a76542337df436436e66017f66dd25
- path: ./output/index/salmon/rank.bin
md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
- path: ./output/index/salmon/pos.bin
- path: ./output/index/salmon/seq.bin