mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
23 lines
859 B
Text
23 lines
859 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { TIDDIT_SV } from '../../../../software/tiddit/sv/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_tiddit_sv {
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true) ]
|
|
]
|
|
fasta = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
|
|
fai = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta.fai", checkIfExists: true)
|
|
|
|
TIDDIT_SV ( input, fasta, fai )
|
|
}
|
|
|
|
workflow test_tiddit_sv_no_ref {
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true) ]
|
|
]
|
|
|
|
TIDDIT_SV ( input, [], [] )
|
|
}
|