nf-core_modules/modules/phyloflash/meta.yml
Matthias Hörtenhuber e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00

51 lines
1.5 KiB
YAML

name: phyloflash
description: phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
keywords:
- metagenomics
- illumina datasets
- phylogenetic composition
tools:
- phyloflash:
description: phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
homepage: https://hrgv.github.io/phyloFlash/
documentation: https://hrgv.github.io/phyloFlash/usage.html
tool_dev_url: https://github.com/HRGV/phyloFlash
doi: "10.1128/mSystems.00920-20"
licence: ["GPL v3"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: Channel containing single or paired-end reads
pattern: "*.{fastq.gz,fq.gz}"
- sliva_db:
type: folder
description: Folder containing the SILVA database
pattern: "ref"
- univec_db:
type: folder
description: Folder containing UniVec database
pattern: "UniVec"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- results:
type: folder
description: Folder containing the results of phyloFlash analysis
pattern: "${prefix}*"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@abhi18av"