mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
51 lines
1.2 KiB
YAML
51 lines
1.2 KiB
YAML
name: tiddit_sv
|
|
description: Identify chromosomal rearrangements.
|
|
keywords:
|
|
- structural
|
|
- variants
|
|
- vcf
|
|
tools:
|
|
- sv:
|
|
description: Search for structural variants.
|
|
homepage: https://github.com/SciLifeLab/TIDDIT
|
|
documentation: https://github.com/SciLifeLab/TIDDIT/blob/master/README.md
|
|
doi: 10.12688/f1000research.11168.1
|
|
licence: ["GPL-3.0-or-later"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Input FASTA file
|
|
pattern: "*.{fasta,fa}"
|
|
- fai:
|
|
type: file
|
|
description: FASTA index file
|
|
pattern: "*.{fai}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: vcf
|
|
pattern: "*.{vcf}"
|
|
- ploidy:
|
|
type: file
|
|
description: tab
|
|
pattern: "*.{ploidy.tab}"
|
|
- signals:
|
|
type: file
|
|
description: tab
|
|
pattern: "*.{signals.tab}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@maxulysse"
|