mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
24 lines
578 B
Bash
Executable file
24 lines
578 B
Bash
Executable file
#!/usr/bin/env bash
|
|
set -euo pipefail
|
|
|
|
# Build and push all containers
|
|
|
|
build_push() {
|
|
GENOME=$1
|
|
SNPEFF_CACHE_VERSION=$2
|
|
SNPEFF_TAG=$3
|
|
|
|
docker build \
|
|
-t nfcore/snpeff:${SNPEFF_TAG}.${GENOME} \
|
|
software/snpeff/. \
|
|
--build-arg GENOME=${GENOME} \
|
|
--build-arg SNPEFF_CACHE_VERSION=${SNPEFF_CACHE_VERSION}
|
|
|
|
docker push nfcore/snpeff:${SNPEFF_TAG}.${GENOME}
|
|
}
|
|
|
|
build_push "GRCh37" "75" "5.0"
|
|
build_push "GRCh38" "99" "5.0"
|
|
build_push "GRCm38" "99" "5.0"
|
|
build_push "CanFam3.1" "99" "5.0"
|
|
build_push "WBcel235" "99" "5.0"
|