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https://github.com/MillironX/nf-core_modules.git
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0337916f8a
* Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
name: yara_mapper
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description: Align reads to a reference genome using YARA
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keywords:
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- align
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- genome
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- reference
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tools:
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- yara:
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description: Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
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homepage: https://github.com/seqan/seqan
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documentation: https://github.com/seqan/seqan
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tool_dev_url: https://github.com/seqan/seqan
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doi: ""
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licence: ['https://raw.githubusercontent.com/seqan/seqan/develop/apps/yara/LICENSE']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: |
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List of input FastQ files of size 1 and 2 for single-end and paired-end data,
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respectively.
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- index:
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type: file
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description: YARA genome index files
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- bam:
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type: file
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description: Sorted BAM file
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pattern: "*.{bam}"
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authors:
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- "@apeltzer"
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