mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
d4160c669b
* first commit * first commit * update test.yml * update test.yml * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * add support for vcf haplotype maps * update test * update test data config, use test data * fix exit code * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * remove unused stub Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>
14 lines
631 B
Text
14 lines
631 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PICARD_CROSSCHECKFINGERPRINTS } from '../../../../modules/picard/crosscheckfingerprints/main.nf'
|
|
|
|
workflow test_picard_crosscheckfingerprints {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
[file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)],
|
|
]
|
|
PICARD_CROSSCHECKFINGERPRINTS ( input,[], file(params.test_data['homo_sapiens']['genome']['haplotype_map'], checkIfExists: true))
|
|
}
|