mirror of
https://github.com/MillironX/nf-core_modules.git
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710ab76b90
* new gubbins module * new gubbins module * new gubbins module * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gubbins/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * new gubbins module * Update tests/config/test_data.config Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/software/gubbins/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * new gubbins module * new gubbins module Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
23 lines
1.1 KiB
YAML
23 lines
1.1 KiB
YAML
- name: gubbins
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command: nextflow run ./tests/software/gubbins -entry test_gubbins -c tests/config/nextflow.config
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tags:
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- gubbins
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files:
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- path: output/gubbins/test.filtered_polymorphic_sites.fasta
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md5sum: c9dff2294307eb2200a6e19efce47796
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- path: output/gubbins/test.recombination_predictions.embl
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/gubbins/test.recombination_predictions.gff
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md5sum: a2ca9c119674f4d121a8f78e4078fe05
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- path: output/gubbins/test.branch_base_reconstruction.embl
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/gubbins/test.summary_of_snp_distribution.vcf
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md5sum: afee50e92fb919a5df487fbda0b9dbb5
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- path: output/gubbins/test.per_branch_statistics.csv
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md5sum: 0f364b5e0b01a6be9b6a4407658ab25f
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- path: output/gubbins/test.filtered_polymorphic_sites.phylip
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md5sum: 85db9d0896cfec34a73641496b7498bb
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- path: output/gubbins/test.final_tree.tre
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md5sum: dce7164a0c69bb3d642a419907364aa3
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- path: output/gubbins/test.node_labelled.final_tree.tre
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md5sum: beef5ce05aca4598bb3f42caf126e045
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