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https://github.com/MillironX/nf-core_modules.git
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13bd67ed8a
* Fix paths for bowtie2/build_test * Fix paths for bowtie2/align * Fix paths for bwameth/index * Fix paths for bwameth/align * Fix paths for multiqc tests
16 lines
595 B
Text
16 lines
595 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTQC } from '../../../software/fastqc/main.nf' addParams( options: [:] )
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include { MULTIQC } from '../../../software/multiqc/main.nf' addParams( options: [:] )
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workflow test_multiqc {
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input = [ [ id: 'test', single_end: false ],
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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FASTQC ( input )
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MULTIQC ( FASTQC.out.zip.collect { it[1] } )
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}
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