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f126d980d7
* inital commit * added meta.yaml info * add initial logic for featurecounts test * add args and change SE/PE to strandedness for featurecounts test * added tests to pytest * added test.yml * removed GTF flag in options * corrected test meta params * meta yaml corrected tool info * update test.yml * fix lint errors meta.yml Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
35 lines
1.5 KiB
YAML
35 lines
1.5 KiB
YAML
- name: subread featurecounts test_subread_featurecounts_forward
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command: nextflow run tests/software/subread/featurecounts -entry test_subread_featurecounts_forward -c tests/config/nextflow.config
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tags:
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- subread
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- subread_featurecounts_forward
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- subread_featurecounts
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files:
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- path: output/subread/test.featureCounts.txt.summary
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md5sum: d78617192451a57f6ef249ddcaf13720
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- path: output/subread/test.featureCounts.txt
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md5sum: b0a1f7563afe49007f422d4c9ca5ee6c
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- name: subread featurecounts test_subread_featurecounts_reverse
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command: nextflow run tests/software/subread/featurecounts -entry test_subread_featurecounts_reverse -c tests/config/nextflow.config
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tags:
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- subread
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- subread_featurecounts
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- subread_featurecounts_reverse
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files:
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- path: output/subread/test.featureCounts.txt.summary
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md5sum: 4217004d0b55f870f77092364f59e44d
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- path: output/subread/test.featureCounts.txt
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md5sum: 412840a8880cd29674b3d5404d3de19b
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- name: subread featurecounts test_subread_featurecounts_unstranded
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command: nextflow run tests/software/subread/featurecounts -entry test_subread_featurecounts_unstranded -c tests/config/nextflow.config
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tags:
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- subread
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- subread_featurecounts
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- subread_featurecounts_unstranded
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files:
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- path: output/subread/test.featureCounts.txt.summary
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md5sum: ee585faeb1edfcd2188a5e486a0e98a9
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- path: output/subread/test.featureCounts.txt
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md5sum: 6b684e11a1e54bec7e1ee5e3f651d7fd
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