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7ad42eae1b
* add software/cooler * fix the wrong files uploaded. * create a branch for cooler/zoomify * Apply suggestions from code review * update functions.nf to new version. * update the test file to test-datasets. * update the test method of zoomify * update dump test file. * update version.txt to version.yml * Update modules/cooler/dump/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix the output bug of versions update to pytest_modules.yml * update the test file path and fix the output versions. * Update modules/cooler/dump/main.nf * indent Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
14 lines
546 B
Text
14 lines
546 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { COOLER_ZOOMIFY } from '../../../../modules/cooler/zoomify/main.nf' addParams( options: ['args':'-r 2,4,8', publish_files:[:]] )
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include { COOLER_DUMP } from '../../../../modules/cooler/dump/main.nf' addParams( options: [:] )
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workflow test_cooler_zoomify {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['generic']['cooler']['test_merge_cool'], checkIfExists: true)]
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COOLER_ZOOMIFY ( input )
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COOLER_DUMP(COOLER_ZOOMIFY.out.mcool, "/resolutions/2")
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}
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