nf-core_modules/software/fastqc/test/main.nf
2020-07-11 14:33:12 +02:00

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#!/usr/bin/env nextflow
nextflow.preview.dsl = 2
params.outdir = "." // gets set in nextflow.config file (as './results/fastqc')
params.fastqc_args = ''
params.verbose = false
// TODO: check the output files in some way
// include '../../../tests/functions/check_process_outputs.nf'
include '../main.nf'
// Define input channels
ch_read_files = Channel
.fromFilePairs('../../../test-datasets/test*{1,2}.fastq.gz',size:-1)
// .view() // to check whether the input channel works
// Run the workflow
workflow {
FASTQC (ch_read_files, params.outdir, params.fastqc_args, params.verbose)
// .check_output()
}