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https://github.com/MillironX/nf-core_modules.git
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7b1e84f7be
* feat: add bcftools index * Extend tests to also test gen for TBI * Update meta.yml * Update meta.yml
23 lines
772 B
Text
23 lines
772 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_INDEX as BCFTOOLS_INDEX_CSI } from '../../../../modules/bcftools/index/main.nf' addParams( options: [:] )
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include { BCFTOOLS_INDEX as BCFTOOLS_INDEX_TBI } from '../../../../modules/bcftools/index/main.nf' addParams( options: [args: '-t'] )
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workflow test_bcftools_index_csi {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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BCFTOOLS_INDEX_CSI ( input )
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}
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workflow test_bcftools_index_tbi {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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BCFTOOLS_INDEX_TBI ( input )
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}
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