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7b4a28b6e8
* feat: add VEP module * fix: name * fix: EC lint] * feat: add info about params * fix: params as params, not input * fix: improve script * Update software/ensemblvep/environment.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
12 lines
431 B
Text
12 lines
431 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ENSEMBLVEP } from '../../../software/ensemblvep/main.nf' addParams( vep_tag: '104.3.WBcel235', use_cache: false )
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workflow test_ensemblvep {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
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]
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ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [] )
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}
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