mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
7b4a28b6e8
* feat: add VEP module * fix: name * fix: EC lint] * feat: add info about params * fix: params as params, not input * fix: improve script * Update software/ensemblvep/environment.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
12 lines
431 B
Text
12 lines
431 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ENSEMBLVEP } from '../../../software/ensemblvep/main.nf' addParams( vep_tag: '104.3.WBcel235', use_cache: false )
|
|
|
|
workflow test_ensemblvep {
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
|
|
]
|
|
ENSEMBLVEP ( input, "WBcel235", "caenorhabditis_elegans", "104", [] )
|
|
}
|