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https://github.com/MillironX/nf-core_modules.git
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938387d10d
* feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
33 lines
1.1 KiB
Text
33 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HMMER_HMMSEARCH } from '../../../../modules/hmmer/hmmsearch/main.nf'
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workflow test_hmmer_hmmsearch {
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input = [
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[ id:'test', single_end:false ], // meta map
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/bac.16S_rRNA.hmm.gz', checkIfExists: true),
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/e_coli_k12_16s.fna.gz', checkIfExists: true),
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false,
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false,
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false
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]
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HMMER_HMMSEARCH ( input )
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}
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workflow test_hmmer_hmmsearch_optional {
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input = [
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[ id:'test', single_end:false ], // meta map
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/bac.16S_rRNA.hmm.gz', checkIfExists: true),
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/hmmer/e_coli_k12_16s.fna.gz', checkIfExists: true),
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true,
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true,
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true
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]
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HMMER_HMMSEARCH ( input )
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}
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