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8d4373b4e8
* added bcftools convert * Update modules/bcftools/convert/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * updated test.yml * Update modules/bcftools/convert/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * added automatic output type detection * linting * removed a trailing whitespace Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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292 B
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13 lines
No EOL
292 B
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: BCFTOOLS_CONVERT_GVCF {
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ext.args = '--gvcf2vcf'
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}
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withName: BCFTOOLS_CONVERT_BCF {
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ext.args = '--gvcf2vcf --output-type b5'
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}
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} |