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36 lines
1.2 KiB
Text
36 lines
1.2 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { STRINGTIE as STRINGTIE_F } from '../../../software/stringtie/main.nf' addParams( options: [ publish_dir:'test_stringtie_forward' ] )
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include { STRINGTIE as STRINGTIE_R } from '../../../software/stringtie/main.nf' addParams( options: [ publish_dir:'test_stringtie_reverse' ] )
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/*
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* Test with forward strandedness
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*/
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workflow test_stringtie_forward {
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def input = []
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input = [ [ id:'test', strandedness:'forward' ], // meta map
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[ file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ] ]
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STRINGTIE_F (
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input,
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file("${launchDir}/tests/data/gff/a.gtf", checkIfExists: true)
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)
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}
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/*
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* Test with reverse strandedness
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*/
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workflow test_stringtie_reverse {
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def input = []
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input = [ [ id:'test', strandedness:'reverse' ], // meta map
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[ file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ] ]
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STRINGTIE_R (
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input,
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file("${launchDir}/tests/data/gff/a.gtf", checkIfExists: true)
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)
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}
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