nf-core_modules/tests/modules/tiddit/sv/test.yml
Maxime U. Garcia b689b8ed88
TIDDIT - add --skip_assembly when no bwa specified (#1769)
add --skip_assembly when no bwa specified
2022-06-13 17:02:59 +02:00

43 lines
1.6 KiB
YAML

- name: tiddit sv test_tiddit_sv_bam
command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
tags:
- tiddit
- tiddit/sv
files:
- path: output/tiddit/test.ploidies.tab
md5sum: 6319d3611f7b6b94425a184d274b3dfc
- path: output/tiddit/test.vcf
md5sum: 157907671297c34bacfd3e73eff9bbdf
- name: tiddit sv test_tiddit_sv_cram
command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
tags:
- tiddit
- tiddit/sv
files:
- path: output/tiddit/test.ploidies.tab
md5sum: f1162a940ddc8b963f6e0e506bb5c136
- path: output/tiddit/test.vcf
md5sum: 56687eeffa452f78f18d54a69dd17c78
- name: tiddit sv test_tiddit_sv_nobwa_bam
command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
tags:
- tiddit
- tiddit/sv
files:
- path: output/tiddit/test.ploidies.tab
md5sum: 6319d3611f7b6b94425a184d274b3dfc
- path: output/tiddit/test.vcf
md5sum: ddac94f9cd4f991b6ce2052d7f78a525
- name: tiddit sv test_tiddit_sv_nobwa_cram
command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
tags:
- tiddit
- tiddit/sv
files:
- path: output/tiddit/test.ploidies.tab
md5sum: f1162a940ddc8b963f6e0e506bb5c136
- path: output/tiddit/test.vcf
md5sum: 680e60574cc28d38c9673a916ecd675c