nf-core_modules/tests/modules/trimmomatic
alyssa-ab c1eb9cce44
Trimmomatic (#1757)
* Trimmomatic main only first draft

* Add test files

* SE PE Adjustment

* Remove extra reads input

* chore: Remove TODOs

* Apply suggestions from code review

Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>

* fix(trimmomatic): Handle SE output correctly

Since there's never going to be unpaired reads for SE reads we can get
away with it for SE

* fix(trimmomatic): Use correct elvis operator to handle logic

* fix(trimmomatic): Add hack to work with SE and PE reads

* Update test.yml

* use the PE and SE trimming correctly

* Made user set adaptors

* Add documentation

* test(trimmomatic): Add files to pytest_modules

* test(trimmomatic): Update name of failing test

Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
2022-06-17 13:18:15 +00:00
..
main.nf Trimmomatic (#1757) 2022-06-17 13:18:15 +00:00
nextflow.config Trimmomatic (#1757) 2022-06-17 13:18:15 +00:00
test.yml Trimmomatic (#1757) 2022-06-17 13:18:15 +00:00