nf-core_modules/tests/modules/pydamage/analyze/test.yml
James A. Fellows Yates e971f538a9
Module new version reporting fixes (#753)
* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Fix IQ tree

* Fix picard markdup and merge sam

* Fix plink/vcf version

* Fix plink version output

* Fix prokka version command

* Fix pydamage

* Try fixing markduplicates

* Fix snpEff

* Fix vcftools version

* Fix pydamage and filtersamreads test run

* Fix MarkDuplicates tests

* Add missing unsorted checks

* Remove MD5 sym due to stochasicity in BAM file
2021-09-28 10:51:19 +01:00

8 lines
315 B
YAML

- name: pydamage analyze test workflow
command: nextflow run tests/modules/pydamage/analyze -entry test_pydamage -c tests/config/nextflow.config
tags:
- pydamage
- pydamage/analyze
files:
- path: output/pydamage/pydamage_results/pydamage_results.csv
md5sum: 6847e0d5aa6dba85bbd2dd509772b7a0