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23 lines
713 B
Text
23 lines
713 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PICARD_MARKDUPLICATES } from '../../../../software/picard/markduplicates/main.nf' addParams( options: [:] )
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workflow test_picard_markduplicates_sorted_bam {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ]
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PICARD_MARKDUPLICATES ( input )
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}
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workflow test_picard_markduplicates_unsorted_bam {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/bam/test.paired_end.name.sorted.bam", checkIfExists: true) ]
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PICARD_MARKDUPLICATES ( input )
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}
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