mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
52 lines
1.3 KiB
YAML
52 lines
1.3 KiB
YAML
name: cooler_cload
|
|
description: Create a cooler from genomic pairs and bins
|
|
keywords:
|
|
- cool
|
|
tools:
|
|
- cooler:
|
|
description: Sparse binary format for genomic interaction matrices
|
|
homepage: https://cooler.readthedocs.io/en/latest/index.html
|
|
documentation: https://cooler.readthedocs.io/en/latest/index.html
|
|
tool_dev_url: https://github.com/open2c/cooler
|
|
doi: "10.1093/bioinformatics/btz540"
|
|
licence: ["BSD-3-clause"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- pairs:
|
|
type: file
|
|
description: Path to contacts (i.e. read pairs) file.
|
|
- index:
|
|
type: file
|
|
description: Path to index file of the contacts.
|
|
- cool_bin:
|
|
type: value
|
|
description: Bins size in bp
|
|
- chromsizes:
|
|
type: file
|
|
description: Path to a chromsizes file.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- cool:
|
|
type: file
|
|
description: Output COOL file path
|
|
pattern: "*.cool"
|
|
- cool_bin:
|
|
type: value
|
|
description: Bins size in bp
|
|
|
|
authors:
|
|
- "@jianhong"
|