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1bc3f6cf39
* initial commit for draft [ci skip] * baseline code [ci skip] * update the test [ci skip] * finalize the description and all tests passing * accomodate optional args [ci skip] * fix the leftover todo statement * Update modules/snpdists/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
name: snpdists
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description: Pairwise SNP distance matrix from a FASTA sequence alignment
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keywords:
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- snp-dists
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- distance-matrix
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tools:
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- snpdists:
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description: Convert a FASTA alignment to SNP distance matrix
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homepage: https://github.com/tseemann/snp-dists
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documentation: https://github.com/tseemann/snp-dists
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tool_dev_url: https://github.com/tseemann/snp-dists
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doi: ""
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licence: ['GPL v3']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- alignment:
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type: file
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description: The input FASTA sequence alignment file
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pattern: "*.{fasta,fasta.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tsv:
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type: file
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description: The output TSV file containing SNP distance matrix
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pattern: "*.tsv"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@abhi18av"
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