mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
55 lines
1.3 KiB
YAML
55 lines
1.3 KiB
YAML
name: pydamage_analyze
|
|
description: Damage parameter estimation for ancient DNA
|
|
keywords:
|
|
- ancient DNA
|
|
- aDNA
|
|
- de novo assembly
|
|
- filtering
|
|
- damage
|
|
- deamination
|
|
- miscoding lesions
|
|
- C to T
|
|
- palaeogenomics
|
|
- archaeogenomics
|
|
- palaeogenetics
|
|
- archaeogenetics
|
|
tools:
|
|
- pydamage:
|
|
description: Damage parameter estimation for ancient DNA
|
|
homepage: https://github.com/maxibor/pydamage
|
|
documentation: https://pydamage.readthedocs.io/
|
|
tool_dev_url: https://github.com/maxibor/pydamage
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM/SAM file
|
|
pattern: "*.{bam,cram,sam}"
|
|
- bai:
|
|
type: file
|
|
description: BAM/CRAM/SAM index file
|
|
pattern: "*.{bai,crai,sai}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- csv:
|
|
type: file
|
|
description: PyDamage results as csv files
|
|
pattern: "*.csv"
|
|
|
|
authors:
|
|
- "@maxibor"
|