mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 12:08:16 +00:00
04e82ec61a
* First version of the biobambam/bammarkduplicates2 module * Fixed the path of versions.yml * Regenerated the checksums as the previous files were generated with a single core * Added the `when:` block, as per #1261 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
15 lines
421 B
Text
15 lines
421 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BIOBAMBAM_BAMMARKDUPLICATES2 } from '../../../../modules/biobambam/bammarkduplicates2/main.nf'
|
|
|
|
workflow test_biobambam_bammarkduplicates2 {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
|
|
]
|
|
|
|
BIOBAMBAM_BAMMARKDUPLICATES2 ( input )
|
|
}
|