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https://github.com/MillironX/nf-core_modules.git
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f5d5926516
* Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
49 lines
1.8 KiB
YAML
49 lines
1.8 KiB
YAML
- name: freebayes test_freebayes
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command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config
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tags:
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- freebayes
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files:
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- path: output/freebayes/test.vcf.gz
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md5sum: f28d0b8e2ccedeac0e590ca2ecaac83d
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- path: output/freebayes/versions.yml
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md5sum: 53651eb835af65df829241257584a7d2
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- name: freebayes test_freebayes_bed
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command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config
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tags:
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- freebayes
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files:
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- path: output/freebayes/test.vcf.gz
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md5sum: 1927441d1b7a4c48cbb61821de300ad4
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- path: output/freebayes/versions.yml
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md5sum: becc93c8a0be580c09d55b955d60a5e1
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- name: freebayes test_freebayes_cram
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command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config
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tags:
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- freebayes
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files:
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- path: output/freebayes/test.vcf.gz
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md5sum: 9b8d1d51d779bbea4086c7f7a2ece641
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- path: output/freebayes/versions.yml
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md5sum: 2e5b266edfc6cab81353cfc72c00f67c
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- name: freebayes test_freebayes_somatic
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command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config
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tags:
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- freebayes
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files:
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- path: output/freebayes/test.vcf.gz
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md5sum: dcaa639912174055c1380913d6102c01
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- path: output/freebayes/versions.yml
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md5sum: 8fbdb4c052fb3e42b5508a966125fa05
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- name: freebayes test_freebayes_somatic_cram_intervals
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command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config
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tags:
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- freebayes
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files:
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- path: output/freebayes/test.vcf.gz
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md5sum: b0052a2b83c0ba1b9686d0c96e61712f
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- path: output/freebayes/versions.yml
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md5sum: af97e3dfdc086188739907c3460e49e0
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