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26 lines
904 B
Text
26 lines
904 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_SINGLE } from '../../../../modules/bamtools/split/main.nf'
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include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_MULTIPLE } from '../../../../modules/bamtools/split/main.nf'
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workflow test_bamtools_split_single_input {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
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]
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BAMTOOLS_SPLIT_SINGLE ( input )
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}
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workflow test_bamtools_split_multiple_input {
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input = [
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[ id:'test', single_end:false ], // meta map
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[file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)]
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[
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BAMTOOLS_SPLIT_MULTIPLE ( input )
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}
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