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4c59984d7b
* add seqkit pair module * local tests * local tests * fix workflow name * fix workflow name * fix version indentation * fix version indentation * fix version indentation * fix review comments * fix review comments * fix github usernames * minor fix * add meta unpaired output Co-authored-by: Peri <rrx8@cdc.gov>
16 lines
455 B
Text
16 lines
455 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SEQKIT_PAIR } from '../../../../modules/seqkit/pair/main.nf'
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workflow test_seqkit_pair {
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input = [
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[ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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SEQKIT_PAIR ( input )
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}
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