mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
28 lines
729 B
YAML
28 lines
729 B
YAML
name: FastQC
|
|
on:
|
|
push: {}
|
|
pull_request:
|
|
paths: tools/tcoffee/*
|
|
|
|
jobs:
|
|
run_ci_test:
|
|
runs-on: ubuntu-latest
|
|
|
|
steps:
|
|
|
|
# Check out the repository
|
|
- uses: actions/checkout@v2
|
|
- name: Checkout submodules
|
|
shell: bash
|
|
run: |
|
|
auth_header="$(git config --local --get http.https://github.com/.extraheader)"
|
|
git submodule sync --recursive
|
|
git -c "http.extraheader=$auth_header" -c protocol.version=2 submodule update --init --force --recursive --depth=1
|
|
|
|
- name: Install Nextflow
|
|
run: |
|
|
wget -qO- get.nextflow.io | bash
|
|
sudo mv nextflow /usr/local/bin/
|
|
|
|
# Test the module
|
|
- run: cd tools/tcoffee/test/ | nextflow run . -ansi-log false
|