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https://github.com/MillironX/nf-core_modules.git
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572abb00b3
* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
9 lines
425 B
YAML
9 lines
425 B
YAML
- name: Run bismark deduplicate test workflow
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command: nextflow run ./tests/software/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark_deduplicate
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files:
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- path: output/bismark/test_methylated_paired_end.deduplicated.bam
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- path: output/bismark/test_methylated_paired_end.deduplication_report.txt
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md5sum: 3876d694f10c58f47e380ba8476a356b
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