nf-core_modules/tests/software/gatk4/variantfiltration/test.yml at 7fe6f9fab290b04096263222c321a6d0194d4b84 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-22 00:02:04 +00:00

Kevin Menden 17dbff52f4

added gatk4 variantfiltration (#265 )

* added gatk4 variantfiltration

* replace merge with filter

* Update software/gatk4/variantfiltration/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* updated input

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-03-17 09:42:35 +01:00

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 - name: Run tests for gatk4/variantfiltration - test_gatk4_variantfiltration
   command: nextflow run tests/software/gatk4/variantfiltration -entry test_gatk4_variantfiltration
     -c tests/config/nextflow.config
   tags:
     - gatk4
     - gatk4_variantfiltration
   files:
     - path: output/gatk4/test.filtered.vcf