mirror of
https://github.com/MillironX/nf-core_modules.git
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f32dc15414
* update bclconvert module, as used in nf-core/demultiplex * reconfigure test with new test data * update test * formatting * update outputs, update meta * update module and test * update test config, test.yml * fix linting * emit logs and reports as dir * fix typo, recreate test.yml * fix linting Co-authored-by: CMGG ICT Team <ict@cmgg.be>
14 lines
390 B
Text
14 lines
390 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: BCLCONVERT {
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ext.args = {[
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meta.lane ? "--bcl-only-lane ${meta.lane}" : "",
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"--force",
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"--first-tile-only true"
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].join(" ").trim()}
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}
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withName: UNTAR {
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publishDir = [ enabled: false ]
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}
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}
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