mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
80d8e87fa4
* feat: all manta/single to modules * fix module name * fix module name * fix: changes from review comments * fix: test data
24 lines
1 KiB
YAML
24 lines
1 KiB
YAML
- name: manta germline
|
|
command: nextflow run ./tests/modules/manta/germline -entry test_manta_germline -c tests/config/nextflow.config
|
|
tags:
|
|
- manta
|
|
- manta/germline
|
|
files:
|
|
- path: output/manta/test.candidate_small_indels.vcf.gz
|
|
- path: output/manta/test.candidate_small_indels.vcf.gz.tbi
|
|
- path: output/manta/test.candidate_sv.vcf.gz
|
|
- path: output/manta/test.candidate_sv.vcf.gz.tbi
|
|
- path: output/manta/test.diploid_sv.vcf.gz
|
|
- path: output/manta/test.diploid_sv.vcf.gz.tbi
|
|
- name: manta germline target bed
|
|
command: nextflow run ./tests/modules/manta/germline -entry test_manta_germline_target_bed -c tests/config/nextflow.config
|
|
tags:
|
|
- manta
|
|
- manta/germline
|
|
files:
|
|
- path: output/manta/test.candidate_small_indels.vcf.gz
|
|
- path: output/manta/test.candidate_small_indels.vcf.gz.tbi
|
|
- path: output/manta/test.candidate_sv.vcf.gz
|
|
- path: output/manta/test.candidate_sv.vcf.gz.tbi
|
|
- path: output/manta/test.diploid_sv.vcf.gz
|
|
- path: output/manta/test.diploid_sv.vcf.gz.tbi
|