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30 lines
828 B
Text
30 lines
828 B
Text
def VERSION='2.7.1' // Version information not provided by tool on CLI
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process KRONA_KTUPDATETAXONOMY {
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label 'process_low'
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conda (params.enable_conda ? "bioconda::krona=2.7.1" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/krona:2.7.1--pl526_5' :
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'quay.io/biocontainers/krona:2.7.1--pl526_5' }"
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output:
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path 'taxonomy/taxonomy.tab', emit: db
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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"""
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ktUpdateTaxonomy.sh \\
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$args \\
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taxonomy/
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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krona: $VERSION
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END_VERSIONS
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"""
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}
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