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https://github.com/MillironX/nf-core_modules.git
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bb90e4fb78
* Remove customisation from bcftools modules * Add save_mpileup option to bcftools/mpileup * Remove params.save_mpileup from ivar/consensus * Update meta.ymls
17 lines
541 B
Text
17 lines
541 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_CONSENSUS } from '../../../../modules/bcftools/consensus/main.nf'
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workflow test_bcftools_consensus {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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BCFTOOLS_CONSENSUS ( input )
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}
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