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* add picard-cleansam * add picard/cleansam * update test yml with output * picard 2.26.10 -> 2.26.9 * add output to test yml Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
15 lines
373 B
Text
15 lines
373 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PICARD_CLEANSAM } from '../../../../modules/picard/cleansam/main.nf'
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workflow test_picard_cleansam {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
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]
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PICARD_CLEANSAM ( input )
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}
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