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4963ca0570
* feat(bases2fastq): nf-core modules create * test(bases2fastq): Update tests * docs(bases2fastq): Update meta.yml * test: Add untar rundir
23 lines
691 B
Text
23 lines
691 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BASES2FASTQ } from '../../../modules/bases2fastq/main.nf'
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include { UNTAR } from '../../../modules/untar/main.nf'
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workflow test_bases2fastq {
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input = Channel.value([
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[ id:'sim-data' ], // meta map
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file("https://raw.githubusercontent.com/nf-core/test-datasets/demultiplex/testdata/sim-data/RunManifest.csv", checkIfExists: true),
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])
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ch_input = input.join(
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UNTAR ( [
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[ id:'sim-data' ],
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file("https://github.com/nf-core/test-datasets/raw/demultiplex/testdata/sim-data/sim-data.tar.gz", checkIfExists: true)
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]).untar
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)
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BASES2FASTQ ( ch_input )
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}
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