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c363d8c37c
* added gvcftools/extractvariants * linting * Update modules/gvcftools/extractvariants/meta.yml Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com> * Update modules/gvcftools/extractvariants/main.nf Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com> * added uncompressed input handling Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
25 lines
691 B
Text
25 lines
691 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GVCFTOOLS_EXTRACTVARIANTS } from '../../../../modules/gvcftools/extractvariants/main.nf'
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workflow test_gvcftools_extractvariants {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true)
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]
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GVCFTOOLS_EXTRACTVARIANTS ( input )
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}
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workflow test_gvcftools_extractvariants_uncompressed {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true)
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]
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GVCFTOOLS_EXTRACTVARIANTS ( input )
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}
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