nf-core_modules/tests/modules/motus/profile/test.yml
James A. Fellows Yates b6ed584443
Update MOTUS/PROFILE module to output log file (#1871)
* Add saving of stderr output as a log file as it contains summary statistics

* Apply suggestions from code review
2022-07-13 11:26:27 +02:00

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YAML

- name: motus profile test_motus_profile_single_end
command: nextflow run tests/modules/motus/profile -entry test_motus_profile_single_end -c tests/config/nextflow.config
tags:
- motus
- motus/profile
files:
- path: output/motus/test.out
contains: ["#consensus_taxonomy\ttest"]
- path: output/motus/test.log
contains: ["Finished computation"]