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nf-core_modules/modules/bclconvert
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Matthias De Smet f32dc15414
update bclconvert module, as used in nf-core/demultiplex (#1569) 
* update bclconvert module, as used in nf-core/demultiplex

* reconfigure test with new test data

* update test

* formatting

* update outputs, update meta

* update module and test

* update test config, test.yml

* fix linting

* emit logs and reports as dir

* fix typo, recreate test.yml

* fix linting

Co-authored-by: CMGG ICT Team <ict@cmgg.be>
2022-06-16 15:03:13 +02:00
..
.gitignore Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00
Dockerfile Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00
LICENSE Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00
main.nf update bclconvert module, as used in nf-core/demultiplex (#1569) 2022-06-16 15:03:13 +02:00
meta.yml update bclconvert module, as used in nf-core/demultiplex (#1569) 2022-06-16 15:03:13 +02:00
README.md Module/bclconvert (#1485) 2022-04-21 15:39:22 +02:00

README.md

Updating the docker container and making a new module release

bcl-convert is a commercial tool from Illumina. The container provided for the bcl-convert nf-core module is not provided nor supported by Illumina. Updating the bcl-convert versions in the container and pushing the update to Dockerhub needs to be done manually.

  1. Navigate to the appropriate download page. - BCL Convert: download the rpm of the desired bcl-convert version with curl or wget.

  2. Unpack the RPM package using rpm2cpio bcl-convert-*.rpm | cpio -i --make-directories. Place the executable located in <unpack_dir>/usr/bin/bcl-convert in the same folder where the Dockerfile lies.

  3. Create and test the container:

    docker build . -t nfcore/bclconvert:<VERSION>

  4. Access rights are needed to push the container to the Dockerhub nfcore organization, please ask a core team member to do so.

    docker push nfcore/bclconvert:<VERSION>