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42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: cnvpytor_callcnvs
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description: command line tool for calling CNVs in whole genome sequencing data
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- CNV calling
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tools:
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- cnvpytor:
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description: calling CNVs using read depth
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homepage: https://github.com/abyzovlab/CNVpytor
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documentation: https://github.com/abyzovlab/CNVpytor
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tool_dev_url: https://github.com/abyzovlab/CNVpytor
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doi: "10.1101/2021.01.27.428472v1"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test']
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- pytor:
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type: file
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description: pytor file containing partitions of read depth histograms using mean-shift method
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pattern: "*.{pytor}"
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- bin_sizes:
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type: string
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description: list of binsizes separated by space e.g. "1000 10000" and "1000"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- pytor:
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type: file
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description: pytor files containing cnv calls
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pattern: "*.{pytor}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@sima-r"
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