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7bfbce94b0
* Added fq/lint module Additions: - fq/lint module, which checks paired end FASTQ files and confirms they are valid. Relates to #1967 * fq/lint linting * Correct Singularity image Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
18 lines
597 B
YAML
18 lines
597 B
YAML
- name: fq lint test_fq_lint_success
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command: nextflow run ./tests/modules/fq/lint -entry test_fq_lint_success -c ./tests/config/nextflow.config -c ./tests/modules/fq/lint/nextflow.config
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tags:
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- fq
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- fq/lint
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files:
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- path: output/fq/test.fq_lint.txt
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contains:
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- "fq-lint start"
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- "read 100 records"
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- "fq-lint end"
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- name: fq lint test_fq_lint_fail
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command: nextflow run ./tests/modules/fq/lint -entry test_fq_lint_fail -c ./tests/config/nextflow.config -c ./tests/modules/fq/lint/nextflow.config
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tags:
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- fq
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- fq/lint
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exit_code: 1
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