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90aef30f43
* Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
36 lines
1.3 KiB
Text
36 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HAMRONIZATION_DEEPARG } from '../../../../modules/hamronization/deeparg/main.nf'
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include { HAMRONIZATION_DEEPARG as HAMRONIZATION_DEEPARG_SECOND } from '../../../../modules/hamronization/deeparg/main.nf'
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include { HAMRONIZATION_SUMMARIZE } from '../../../../modules/hamronization/summarize/main.nf'
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workflow test_hamronization_summarize {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['hamronization']['genome_mapping_potential_arg'], checkIfExists: true),
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]
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input2 = [
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[ id:'test2', single_end:false ], // meta map
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file(params.test_data['bacteroides_fragilis']['hamronization']['genome_mapping_potential_arg'], checkIfExists: true),
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]
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HAMRONIZATION_DEEPARG ( input, 'tsv', '1.0.2', '2' )
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HAMRONIZATION_DEEPARG_SECOND ( input2, 'tsv', '1.0.2', '2' )
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ch_deeparg_run_one = HAMRONIZATION_DEEPARG.out.tsv
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ch_deeparg_run_two = HAMRONIZATION_DEEPARG_SECOND.out.tsv
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ch_deeparg_run_one
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.mix( ch_deeparg_run_two )
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.map{
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[ it[1] ]
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}
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.collect()
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.set { ch_input_for_summarize }
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HAMRONIZATION_SUMMARIZE ( ch_input_for_summarize , 'json' )
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}
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