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https://github.com/MillironX/nf-core_modules.git
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835ac48565
* fix multiqc process * fix multiqc tests * move multiqc test input data into tests/data/fastqc/ folder Move input tests data into tests/data/fastqc/ and linking those files into software/multiqc/test/input/ as stated from the project documentation * add multiqc github workflow * remove unused file * generalize multiqc input data User must collect all desidered files in a channel (as described in https://seqera.io/training/#_multiqc_report * update meta information
25 lines
588 B
Text
Executable file
25 lines
588 B
Text
Executable file
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MULTIQC } from '../main.nf' addParams( options: [ publish_dir:'test_multi' ] )
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/*
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* Test with single-end data
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*/
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workflow test_multi {
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def input = []
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input = [
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file("${baseDir}/input/test_1_fastqc.html", checkIfExists: true),
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file("${baseDir}/input/test_2_fastqc.html", checkIfExists: true),
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file("${baseDir}/input/test_1_fastqc.zip", checkIfExists: true),
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file("${baseDir}/input/test_2_fastqc.zip", checkIfExists: true)
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]
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MULTIQC ( input )
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}
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workflow {
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test_multi()
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}
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