mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
32 lines
1.1 KiB
YAML
32 lines
1.1 KiB
YAML
- name: Run bwa index
|
|
command: nextflow run ./tests/software/bwa -profile singularity -entry test_bwa_index -c tests/config/nextflow.config
|
|
tags:
|
|
- bwa
|
|
- bwa_index
|
|
files:
|
|
- path: output/bwa/bwa/NC_010473.amb
|
|
md5sum: 942a990ae872f1c0b8d72dda2db405d5
|
|
- path: output/bwa/bwa/NC_010473.bwt
|
|
md5sum: 7301b52e2ecb893d429a49fa692447ae
|
|
- path: output/bwa/bwa/NC_010473.pac
|
|
md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
|
|
- path: output/bwa/bwa/NC_010473.sa
|
|
md5sum: a47dcc92e750e2f16fbd979b8ff9538e
|
|
|
|
- name: Run bwa mem single-end
|
|
command: nextflow run ./tests/software/bwa -profile singularity -entry test_bwa_mem_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bwa
|
|
- bwa_mem
|
|
files:
|
|
- path: output/test_single_end/test.bam
|
|
md5sum: 52e81e5bd523d0b27fe533b21a0d80f5
|
|
|
|
- name: Run bwa mem paired-end
|
|
command: nextflow run ./tests/software/bwa -profile singularity -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bwa
|
|
- bwa_mem
|
|
files:
|
|
- path: output/test_paired_end/test.bam
|
|
md5sum: 86d82fdb68ed384c656cfc62a253052f
|