nf-core_modules/tests/software/bwa/test.yml
2021-02-02 13:37:40 +00:00

32 lines
1.1 KiB
YAML

- name: Run bwa index
command: nextflow run ./tests/software/bwa -profile singularity -entry test_bwa_index -c tests/config/nextflow.config
tags:
- bwa
- bwa_index
files:
- path: output/bwa/bwa/NC_010473.amb
md5sum: 942a990ae872f1c0b8d72dda2db405d5
- path: output/bwa/bwa/NC_010473.bwt
md5sum: 7301b52e2ecb893d429a49fa692447ae
- path: output/bwa/bwa/NC_010473.pac
md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
- path: output/bwa/bwa/NC_010473.sa
md5sum: a47dcc92e750e2f16fbd979b8ff9538e
- name: Run bwa mem single-end
command: nextflow run ./tests/software/bwa -profile singularity -entry test_bwa_mem_single_end -c tests/config/nextflow.config
tags:
- bwa
- bwa_mem
files:
- path: output/test_single_end/test.bam
md5sum: 52e81e5bd523d0b27fe533b21a0d80f5
- name: Run bwa mem paired-end
command: nextflow run ./tests/software/bwa -profile singularity -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
tags:
- bwa
- bwa_mem
files:
- path: output/test_paired_end/test.bam
md5sum: 86d82fdb68ed384c656cfc62a253052f