mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
378fa5fbb4
* initial version of gamma module * remove trailing whitespace * prettier fix * hardcode version number * Update modules/gamma/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/gamma/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/gamma/meta.yml Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * update meta and prettier * add whitespaces * add fasta output and tests Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
63 lines
1.5 KiB
YAML
63 lines
1.5 KiB
YAML
name: "gamma"
|
|
description: Gene Allele Mutation Microbial Assessment
|
|
keywords:
|
|
- gamma
|
|
- gene-calling
|
|
tools:
|
|
- "gamma":
|
|
description: "Tool for Gene Allele Mutation Microbial Assessment"
|
|
homepage: "https://github.com/rastanton/GAMMA"
|
|
documentation: "https://github.com/rastanton/GAMMA"
|
|
tool_dev_url: "https://github.com/rastanton/GAMMA"
|
|
doi: "10.1093/bioinformatics/btab607"
|
|
licence: "['Apache License 2.0']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: FASTA file
|
|
pattern: "*.{fa,fasta}"
|
|
- db:
|
|
type: file
|
|
description: Database in FASTA format
|
|
pattern: "*.{fa,fasta}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
- gamma:
|
|
type: file
|
|
description: GAMMA file with annotated gene matches
|
|
pattern: "*.{gamma}"
|
|
|
|
- psl:
|
|
type: file
|
|
description: PSL file with all gene matches found
|
|
pattern: "*.{psl}"
|
|
|
|
- gff:
|
|
type: file
|
|
description: GFF file
|
|
pattern: "*.{gff}"
|
|
|
|
- fasta:
|
|
type: file
|
|
description: multifasta file of the gene matches
|
|
pattern: "*.{fasta}"
|
|
|
|
authors:
|
|
- "@sateeshperi"
|
|
- "@rastanton"
|